Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rlmJRibosomal RNA small subunit methyltransferase D, RsmJ family protein; Specifically methylates the adenine in position 2030 of 23S rRNA. (280 aa)    
Predicted Functional Partners:
prlC
Peptidase M3 family protein.
       0.609
rsmJ
SAM-dependent methyltransferase family protein; Specifically methylates the guanosine in position 1516 of 16S rRNA.
     
 0.571
gor
Gluta_reduc_1: glutathione-disulfide reductase.
       0.557
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
 0.513
rlmF
Hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA.
      
 0.502
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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