STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhjH_1EAL domain protein. (263 aa)    
Predicted Functional Partners:
cheV
Response regulator.
  
  
 0.889
motA
motA1: flagellar motor stator protein MotA.
   
    0.841
dosP
GGDEF: diguanylate cyclase domain protein.
 
 
 0.818
barA_2
Sensory box protein.
 
 
 0.774
adrA_3
Putative diguanylate cyclase AdrA.
 
  
 0.771
cph2_2
GGDEF: diguanylate cyclase domain protein.
 
 
 0.733
ycgR
Flagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
  
 0.709
csrD
RNase E specificity factor CsrD.
 
  
 0.703
ydaM_1
Putative diguanylate cyclase YdaM.
 
  
 0.696
bvgS_2
His Kinase A domain protein.
 
  
 0.696
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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