STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcsEcellulose_bcsE: cellulose biosynthesis protein BcsE. (518 aa)    
Predicted Functional Partners:
yhjQ
cellulose_yhjQ: cellulose synthase operon protein YhjQ.
 
 
 0.977
CH53_1640
Hypothetical protein.
 
  
 0.973
bcsF
cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT.
  
 
 0.947
bcsC
Tetratricopeptide repeat family protein.
 
   
 0.888
bcsB
Bacterial cellulose synthase subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
  
 0.884
CH53_1637
Hypothetical protein.
   
 
 0.853
bcsZ
Glycosyl hydrolases 8 family protein.
 
   
 0.827
bcsA
Cellulose synthase catalytic subunit UDP-forming; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
 
   
 0.789
yobD
Hypothetical protein.
  
     0.757
flgN
flgN family protein.
  
     0.753
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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