ccmA-4 protein (Yersinia intermedia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ccmA-4

Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (510 aa)

Predicted Functional Partners:

xylH

0.989

xylF

0.955

rbsC1

0.782

rbsC_5

0.782

alsC_3

0.781

lsrC

0.775

rbsC_8

0.769

mglC

0.760

rbsC_2

0.750

lsrD_2

0.748

Your Current Organism:

Yersinia intermedia

NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
alsC_3	ccmA-4	CH53_3038	CH53_1663	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	0.781
ccmA-4	alsC_3	CH53_1663	CH53_3038	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.781
ccmA-4	lsrC	CH53_1663	CH53_1161	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.775
ccmA-4	lsrD_2	CH53_1663	CH53_1162	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.748
ccmA-4	mglC	CH53_1663	CH53_3272	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.760
ccmA-4	rbsC1	CH53_1663	CH53_3746	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.782
ccmA-4	rbsC_2	CH53_1663	CH53_831	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.750
ccmA-4	rbsC_5	CH53_1663	CH53_3947	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.782
ccmA-4	rbsC_8	CH53_1663	CH53_1788	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.769
ccmA-4	xylF	CH53_1663	CH53_1664	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	xylF: D-xylose ABC transporter, D-xylose-binding protein.	0.955
ccmA-4	xylH	CH53_1663	CH53_1662	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.989
lsrC	ccmA-4	CH53_1161	CH53_1663	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	0.775
lsrC	lsrD_2	CH53_1161	CH53_1162	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.977
lsrC	xylF	CH53_1161	CH53_1664	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	xylF: D-xylose ABC transporter, D-xylose-binding protein.	0.605
lsrD_2	ccmA-4	CH53_1162	CH53_1663	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	0.748
lsrD_2	lsrC	CH53_1162	CH53_1161	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.977
lsrD_2	rbsC_8	CH53_1162	CH53_1788	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	0.400
lsrD_2	xylF	CH53_1162	CH53_1664	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	xylF: D-xylose ABC transporter, D-xylose-binding protein.	0.665
mglC	ccmA-4	CH53_3272	CH53_1663	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	0.760
rbsC1	ccmA-4	CH53_3746	CH53_1663	Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.	Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.	0.782

page 1 of 2

Server load: low (38%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About