STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydDcydD: thiol reductant ABC exporter, CydD subunit. (588 aa)    
Predicted Functional Partners:
cydC
cydC: thiol reductant ABC exporter, CydC subunit.
 
0.999
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
  
 0.962
cydA
Cytochrome d ubiquinol oxidase subunit 1.
 
  
 0.907
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
  
 0.893
appC
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
  
 0.849
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.737
glnQ_2
ABC transporter family protein.
 
    
0.616
proV
proV: glycine betaine/L-proline transport ATP binding subunit.
 
     
0.584
glnQ_3
Hypothetical protein.
 
     
0.573
cbl
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
      
 0.573
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.