STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutR_2Bacterial regulatory s, gntR family protein. (232 aa)    
Predicted Functional Partners:
CH53_1715
2-keto-3-deoxy-galactonokinase family protein.
  
 0.957
dgoD
D-galactonate dehydratase; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
     0.939
eda_2
Nitronate monooxygenase family protein.
 
   
 0.827
CH53_1711
Hypothetical protein; Dipeptidyl peptidase IV (DPP IV) N-terminal region family protein.
      0.767
dgoT
D-galactonate transporter.
 
     0.639
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.568
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
   
 0.462
rhaR
HTH-type transcriptional activator rhaR; Activates expression of the rhaSR operon in response to L- rhamnose.
 
  
 0.449
CH53_1717
Sensory box protein.
       0.440
rhaS_1
Helix-turn-helix domain protein; Activates expression of the rhaBAD and rhaT operons.
 
  
 0.439
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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