STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fixJ_1Bacterial regulatory s, luxR family protein. (205 aa)    
Predicted Functional Partners:
fixL
His Kinase A domain protein.
 
 
 0.963
ttrS
His Kinase A domain protein.
 
 
 0.700
cheR
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
      0.665
barA_2
Sensory box protein.
 
 
 
 0.646
basR_1
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
  
   
 0.624
CH53_1745
Hypothetical protein.
 
   
 0.619
ompR_1
Response regulator.
  
   
 0.607
phoB
phoB: phosphate regulon transcriptional regulatory protein PhoB.
  
   
 0.604
adrA_2
GGDEF: diguanylate cyclase domain protein.
 
 
 
 0.582
phoP
Transcriptional regulatory protein phoP.
  
   
 0.582
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.