cspD protein (Yersinia intermedia) - STRING interaction network

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cspD

cspD: cold shock domain protein CspD. (85 aa)

Predicted Functional Partners:

cspE

0.793

CH53_3759

0.689

clpS

0.455

rpsL

0.429

rpsS

0.414

rpsQ

0.400

Your Current Organism:

Yersinia intermedia

NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CH53_3759	cspD	CH53_3759	CH53_177	Hypothetical protein.	cspD: cold shock domain protein CspD.	0.689
clpS	cspD	CH53_176	CH53_177	ATP-dependent Clp protease adaptor ClpS family protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.	cspD: cold shock domain protein CspD.	0.455
cspD	CH53_3759	CH53_177	CH53_3759	cspD: cold shock domain protein CspD.	Hypothetical protein.	0.689
cspD	clpS	CH53_177	CH53_176	cspD: cold shock domain protein CspD.	ATP-dependent Clp protease adaptor ClpS family protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.	0.455
cspD	cspE	CH53_177	CH53_146	cspD: cold shock domain protein CspD.	Cold shock-like protein CspE; RNA chaperone, negative regulator of cspA transcription.	0.793
cspD	rpsL	CH53_177	CH53_1495	cspD: cold shock domain protein CspD.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.429
cspD	rpsQ	CH53_177	CH53_1479	cspD: cold shock domain protein CspD.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.400
cspD	rpsS	CH53_177	CH53_1484	cspD: cold shock domain protein CspD.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.414
cspE	cspD	CH53_146	CH53_177	Cold shock-like protein CspE; RNA chaperone, negative regulator of cspA transcription.	cspD: cold shock domain protein CspD.	0.793
cspE	rpsL	CH53_146	CH53_1495	Cold shock-like protein CspE; RNA chaperone, negative regulator of cspA transcription.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.429
cspE	rpsS	CH53_146	CH53_1484	Cold shock-like protein CspE; RNA chaperone, negative regulator of cspA transcription.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.414
rpsL	cspD	CH53_1495	CH53_177	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	cspD: cold shock domain protein CspD.	0.429
rpsL	cspE	CH53_1495	CH53_146	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Cold shock-like protein CspE; RNA chaperone, negative regulator of cspA transcription.	0.429
rpsL	rpsQ	CH53_1495	CH53_1479	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.998
rpsL	rpsS	CH53_1495	CH53_1484	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rpsQ	cspD	CH53_1479	CH53_177	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	cspD: cold shock domain protein CspD.	0.400
rpsQ	rpsL	CH53_1479	CH53_1495	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.998
rpsQ	rpsS	CH53_1479	CH53_1484	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rpsS	cspD	CH53_1484	CH53_177	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	cspD: cold shock domain protein CspD.	0.414
rpsS	cspE	CH53_1484	CH53_146	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	Cold shock-like protein CspE; RNA chaperone, negative regulator of cspA transcription.	0.414

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