STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_181AAA domain protein. (553 aa)    
Predicted Functional Partners:
CH53_1230
Hypothetical protein.
 
    0.653
bglH
Cryptic outer membrane porin BglH.
  
     0.588
CH53_2976
Antirestriction family protein.
  
     0.569
CH53_3759
Hypothetical protein.
  
     0.463
int_1
Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.458
frsA
Alpha/beta hydrolase family protein; Belongs to the UPF0255 family.
  
     0.446
CH53_3126
Hypothetical protein.
  
     0.444
malM
Maltose operon periplasmic family protein.
  
     0.426
yhhK
Acetyltransferase domain protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
     0.416
CH53_3576
Phage integrase family protein.
  
     0.408
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.