STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmr_3GGDEF: diguanylate cyclase domain protein. (664 aa)    
Predicted Functional Partners:
echA8
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.946
barA_2
Sensory box protein.
 
 
 0.915
adrA_2
GGDEF: diguanylate cyclase domain protein.
 
 
0.914
adrA_1
GGDEF: diguanylate cyclase domain protein.
 
0.872
dosP
GGDEF: diguanylate cyclase domain protein.
 
 
 
0.864
arcB
Sensory box protein.
 
 
 0.863
cph2_2
GGDEF: diguanylate cyclase domain protein.
 
 
0.838
barA_1
HAMP domain protein.
 
 
 0.837
evgS
Sensor protein evgS.
 
 0.836
bvgS_2
His Kinase A domain protein.
 
 0.832
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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