STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmBL28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)    
Predicted Functional Partners:
rpmG
rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.999
rpsN
Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.994
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.991
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.990
rpmA
L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.989
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.989
rpmI
rpmI_bact: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
 0.989
rpmF
rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.988
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.988
rpsO
S15_bact: ribosomal protein S15.
  
 
 0.988
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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