Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpmERibosomal protein L31; Binds the 23S rRNA. (71 aa)    
Predicted Functional Partners:
rpmG
rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.993
rpmB
L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.990
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
 
 
 0.988
rpsO
S15_bact: ribosomal protein S15.
  
 
 0.988
rpsP
S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rpmF
rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.983
rpmA
L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.982
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.982
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.982
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
 0.981
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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