STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
livFHigh-affinity branched-chain amino acid transport ATP-binding protein LivF; Belongs to the ABC transporter superfamily. (233 aa)    
Predicted Functional Partners:
livM
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
High-affinity branched-chain amino acid transport system permease protein livH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.994
livK
Receptor ligand binding region family protein.
 
 
 0.991
livG
ABC transporter family protein.
 
 
0.985
amiC_1
Periplasmic binding domain protein.
 
 
 0.946
CH53_859
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.891
livH_1
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.838
urtC
urea_trans_UrtC: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.753
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
      
 0.719
urtB
urea_trans_UrtB: urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.717
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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