STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpQ_2Glycerophosphoryl diester phosphodiesterase family protein. (246 aa)    
Predicted Functional Partners:
glpQ
Glycerophosphoryl diester phosphodiesterase family protein.
     
 0.917
pldB
Prolyl oligopeptidase family protein.
    
 0.906
eutB_1
Ethanolamine ammonia lyase large subunit family protein.
     
  0.900
eutC_1
Ethanolamine ammonia-lyase light chain family protein; Belongs to the EutC family.
     
  0.900
CH53_2517
Ethanolamine utilization EutA family protein.
     
  0.900
eutB
Ethanolamine ammonia-lyase heavy chain.
     
  0.900
eutC
Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
     
  0.900
ugpE
Binding--dependent transport system inner membrane component family protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
  
 0.863
ugpA
Binding--dependent transport system inner membrane component family protein.
 
  
 0.844
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
  
 0.823
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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