Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
shlBHemolysin transporter protein shlB. (556 aa)    
Predicted Functional Partners:
shlB-2
Hemolysin transporter protein shlB.
  
  
 
0.908
CH53_3832
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
 
 0.815
CH53_1183
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
 
 0.756
fhaB
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
 
 0.732
rcsB_1
POTRA domain, ShlB-type family protein.
  
  
  0.675
fhaC
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
  
  
 
0.665
prcA
Proconvertase P-domain protein.
 
  
 0.642
prtA-2
Secreted protease A.
  
  
 0.588
prtA-3
Secreted protease A.
  
    0.553
smfA-2
Fimbria A protein.
  
    0.553
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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