STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treCtrehalose_treC: alpha,alpha-phosphotrehalase. (553 aa)    
Predicted Functional Partners:
treP
PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component.
 
 
 0.988
crr
Glucose-specific phosphotransferase enzyme IIA component.
  
 
 0.909
aglB
6-phospho-alpha-glucosidase.
     
 0.903
arbF_2
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein.
 
  
 0.709
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
  
  
 0.668
treR
trehalos_R_Ecol: trehalose operon repressor.
 
  
 0.597
bglF
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
  
 0.587
murP
Phosphotransferase system, EIIC family protein.
 
  
 0.570
ascF
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
  
 0.542
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
  
 0.530
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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