Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| glrK | qseF | CH53_666 | CH53_664 | HAMP domain protein. | AAA domain family protein. | 0.995 |
| glrK | rpoN | CH53_666 | CH53_2245 | HAMP domain protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.903 |
| hyfR_1 | rpoN | CH53_3274 | CH53_2245 | AAA domain family protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.815 |
| pspF | rpoA | CH53_4062 | CH53_1463 | phageshock_pspF: psp operon transcriptional activator. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.625 |
| pspF | rpoB | CH53_4062 | CH53_2095 | phageshock_pspF: psp operon transcriptional activator. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.625 |
| pspF | rpoC | CH53_4062 | CH53_2096 | phageshock_pspF: psp operon transcriptional activator. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.625 |
| pspF | rpoN | CH53_4062 | CH53_2245 | phageshock_pspF: psp operon transcriptional activator. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.968 |
| pspF | rpoZ | CH53_4062 | CH53_1827 | phageshock_pspF: psp operon transcriptional activator. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.625 |
| ptsN | raiA | CH53_2243 | CH53_2244 | nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN. | Ribosome-associated inhibitor A; yfiA: ribosomal subunit interface protein. | 0.865 |
| ptsN | rpoN | CH53_2243 | CH53_2245 | nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.865 |
| qseF | glrK | CH53_664 | CH53_666 | AAA domain family protein. | HAMP domain protein. | 0.995 |
| qseF | rpoN | CH53_664 | CH53_2245 | AAA domain family protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.955 |
| raiA | ptsN | CH53_2244 | CH53_2243 | Ribosome-associated inhibitor A; yfiA: ribosomal subunit interface protein. | nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN. | 0.865 |
| raiA | rpoN | CH53_2244 | CH53_2245 | Ribosome-associated inhibitor A; yfiA: ribosomal subunit interface protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.816 |
| rpoA | pspF | CH53_1463 | CH53_4062 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | phageshock_pspF: psp operon transcriptional activator. | 0.625 |
| rpoA | rpoB | CH53_1463 | CH53_2095 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | rpoC | CH53_1463 | CH53_2096 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rpoA | rpoN | CH53_1463 | CH53_2245 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.908 |
| rpoA | rpoZ | CH53_1463 | CH53_1827 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.996 |
| rpoB | pspF | CH53_2095 | CH53_4062 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | phageshock_pspF: psp operon transcriptional activator. | 0.625 |
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