STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqjFInner membrane protein yqjF. (131 aa)    
Predicted Functional Partners:
CH53_2287
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
  
    0.549
CH53_2289
yqjK-like family protein.
 
     0.515
mgtA
ATPase-IIIB_Mg: magnesium-translocating P-type ATPase.
  
  0.450
elaB_1
Hypothetical protein.
  
    0.445
CH53_1814
yiiD_Cterm: putative thioesterase domain protein.
 
     0.438
yqjE
Hypothetical protein.
  
    0.438
yhcO
Hypothetical protein.
   
    0.431
yhhW
Putative quercetin 2,3-dioxygenase yhhW; Belongs to the pirin family.
  
  
 0.424
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.