Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqjCHypothetical protein. (125 aa)    
Predicted Functional Partners:
elaB_1
Hypothetical protein.
 
  
 0.982
yqjE
Hypothetical protein.
  
  
 0.843
CH53_2289
yqjK-like family protein.
 
  
 0.769
osmY_2
BON domain protein.
  
    0.687
psiF
Phosphate starvation-inducible protein psiF.
  
    0.678
CH53_3844
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.666
wrbA
NAD(P)H:quinone oxidoreductase, type IV; flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV.
   
    0.649
ybaY
Hypothetical protein.
  
    0.646
elaB_2
Hypothetical protein.
  
  
 0.637
yeiU
Inner membrane protein yeiU; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family.
  
     0.620
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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