STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2306Hypothetical protein. (167 aa)    
Predicted Functional Partners:
ygdH
Hypothetical protein.
  
  
  0.916
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
  0.912
mazG
Nucleoside triphosphate pyrophosphohydrolase.
    
  0.906
ushA
Protein UshA; Belongs to the 5'-nucleotidase family.
  
 
  0.903
udk
Udk: uridine kinase.
    
  0.903
yjjG
yjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family.
    
  0.901
nrdD
nrdD: anaerobic ribonucleoside-triphosphate reductase.
     
  0.900
maf-2
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     
  0.900
nagD
HAD-SF-IIA: HAD hydrolase, IIA family protein.
     
  0.900
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
     
  0.900
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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