STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2306Hypothetical protein. (167 aa)    
Predicted Functional Partners:
rlmF
Hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.610
yaeQ
yaeQ family protein.
 
    0.568
CH53_3192
Hypothetical protein.
 
     0.540
yceH
Hypothetical protein; Belongs to the UPF0502 family.
  
     0.530
CH53_3217
Hypothetical protein.
 
    0.481
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
     0.475
afr
Oxidoreductase, NAD-binding Rossmann fold family protein.
       0.466
icsA
Autotrans_barl: outer membrane autotransporter barrel domain protein.
       0.446
CH53_4378
Lipopolysaccharide kinase family protein.
  
     0.407
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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