STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiNPutative quinol monooxygenase ygiN. (101 aa)    
Predicted Functional Partners:
mda66
Flavodoxin-like fold family protein.
     
 0.759
ybjP
Putative lipoprotein YbjP.
  
    0.706
CH53_4071
Putative amidase/amidotransferase.
  
    0.700
ydgH_1
Hypothetical protein.
  
     0.628
bhsA_1
Hypothetical protein.
  
     0.624
bfd
Bacterioferritin-associated ferredoxin.
  
     0.597
mliC
Membrane-bound lysozyme-inhibitor of c-type lysozyme family protein.
  
     0.593
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.585
aaeX
Hypothetical protein.
  
     0.565
rhaS_1
Helix-turn-helix domain protein; Activates expression of the rhaBAD and rhaT operons.
 
  
 0.555
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.