STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
agaRdeoR-like helix-turn-helix domain protein. (269 aa)    
Predicted Functional Partners:
fruA
FRU: PTS system, Fru family, IIB component domain protein.
 
  
 0.711
pfkB
1-phosphofructokinase; pfkB: 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.586
pfkB-2
6-phosphofructokinase isozyme 2; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.577
kbaZ
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
 
     0.531
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
    0.530
agaS
Putative tagatose-6-phosphate ketose/aldose isomerase.
 
   
 0.484
levE
Pts-sorbose: PTS system, mannose/fructose/sorbose, IIB component family protein.
       0.413
manZ_2
PTS system mannose/fructose/sorbose IID component family protein.
  
    0.411
agaC_2
PTS system sorbose-specific iic component family protein.
       0.406
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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