STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2380Type II secretion system (T2SS), F family protein. (293 aa)    
Predicted Functional Partners:
tadA_2
Type II/IV secretion system family protein.
 
  
 0.984
tadZ
Hypothetical protein.
  
  
 0.981
rcpA
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
 
  
 0.976
rcpC
Putative tight adherance operon protein.
  
  
 0.947
tadC
Type II secretion system (T2SS), F family protein.
 
   
 0.918
tadV
Type IV leader peptidase family protein.
  
  
 0.895
tadE
tadE-like family protein.
  
  
 0.849
CH53_2379
Hypothetical protein.
       0.773
CH53_2383
Hypothetical protein.
       0.773
tadF
Putative tight adherance operon protein.
     
 0.761
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.