STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2383Hypothetical protein. (95 aa)    
Predicted Functional Partners:
CH53_2379
Hypothetical protein.
       0.773
CH53_2380
Type II secretion system (T2SS), F family protein.
       0.773
tadA_2
Type II/IV secretion system family protein.
       0.773
tadZ
Hypothetical protein.
       0.773
rcpA
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
       0.773
rcpC
Putative tight adherance operon protein.
       0.773
tadV
Type IV leader peptidase family protein.
       0.634
tadF
Putative tight adherance operon protein.
       0.551
tadE
tadE-like family protein.
       0.551
tadD
TPR repeat family protein.
       0.551
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.