STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcpABacterial type II and III secretion system family protein; Belongs to the bacterial secretin family. (440 aa)    
Predicted Functional Partners:
CH53_2380
Type II secretion system (T2SS), F family protein.
 
 
 0.998
tadA_2
Type II/IV secretion system family protein.
 
 0.998
rcpC
Putative tight adherance operon protein.
  
 
 0.996
tadC
Type II secretion system (T2SS), F family protein.
 
 
 0.995
tadZ
Hypothetical protein.
  
 
 0.994
tadV
Type IV leader peptidase family protein.
  
  
 0.902
tadE
tadE-like family protein.
  
  
 0.798
tadD
TPR repeat family protein.
  
 
 0.798
CH53_2379
Hypothetical protein.
       0.773
CH53_2383
Hypothetical protein.
       0.773
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.