STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2393Copper binding periplasmic CusF family protein. (119 aa)    
Predicted Functional Partners:
cusA_2
2A0601: heavy metal efflux pump, CzcA family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.969
CH53_2392
Outer membrane efflux family protein.
 
 
 0.934
cusB_2
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
0.856
CH53_2394
Hypothetical protein.
       0.623
oprM_2
rND efflux system, outer membrane lipoprotein, NodT family.
  
 
 0.555
cusC_1
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
  
 
 0.555
oprM_1
Outer membrane efflux family protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.430
CH53_3509
Polyketide cyclase / dehydrase and lipid transport family protein.
  
     0.406
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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