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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agaC_2PTS system sorbose-specific iic component family protein. (260 aa)    
Predicted Functional Partners:
manZ_2
PTS system mannose/fructose/sorbose IID component family protein.
 0.998
levE
Pts-sorbose: PTS system, mannose/fructose/sorbose, IIB component family protein.
 
 0.997
manX_3
PTS system fructose IIA component family protein.
 
 0.997
manX_2
PTS system fructose IIA component family protein.
 
 0.990
manX
PTS system mannose-specific EIIAB component.
 
 
 0.987
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.980
sorM
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
 
 0.974
manZ_3
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
 
 0.973
manZ_1
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
 
 0.958
sorB
Sorbose-specific phosphotransferase enzyme IIB component.
 
 
 0.909
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.