Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
iutAtonB-siderophor: TonB-dependent siderophore receptor family protein. (728 aa)    
Predicted Functional Partners:
iucA
iucA / IucC family protein.
 
  
 0.955
iucC
iucA / IucC family protein.
 
  
 0.943
iucD
L-lysine 6-monooxygenase.
 
   
 0.939
iucB
Acetyltransferase domain protein.
 
   
 0.936
CH53_2438
Major Facilitator Superfamily protein.
 
   
 0.721
CH53_3626
Phage integrase family protein.
  
     0.643
tonB
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.636
CH53_479
Bacterial regulatory s, tetR family protein.
  
     0.635
lacZ_1
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
      
 0.623
CH53_1923
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
  
 
 0.558
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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