STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iucDL-lysine 6-monooxygenase. (454 aa)    
Predicted Functional Partners:
iucB
Acetyltransferase domain protein.
 
 0.999
iucC
iucA / IucC family protein.
 
  
 0.996
iucA
iucA / IucC family protein.
 
  
 0.995
iutA
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
   
 0.939
CH53_2438
Major Facilitator Superfamily protein.
 
     0.678
fhuD
Periplasmic binding family protein.
 
   
 0.668
lacZ_1
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
      
 0.620
viuB_2
Siderophore-interacting FAD-binding domain protein.
  
  
 0.616
fhuB
Iron(3+)-hydroxamate import system permease protein fhuB; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.562
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.464
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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