STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nagAnagA: N-acetylglucosamine-6-phosphate deacetylase. (377 aa)    
Predicted Functional Partners:
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 0.986
agaC_2
PTS system sorbose-specific iic component family protein.
 
  
 0.979
manX_3
PTS system fructose IIA component family protein.
    
 0.977
manZ_2
PTS system mannose/fructose/sorbose IID component family protein.
 
  
  0.976
levE
Pts-sorbose: PTS system, mannose/fructose/sorbose, IIB component family protein.
 
  
 0.975
agaS
Putative tagatose-6-phosphate ketose/aldose isomerase.
 
 
 0.968
agaC_1
PTS system sorbose-specific iic component family protein.
    
 0.911
manX_2
PTS system fructose IIA component family protein.
    
 0.906
agaB
Galactosamine-specific PTS system enzyme IIB component.
    
 0.904
manZ_1
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
    
  0.903
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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