Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hifA_2Hypothetical protein. (183 aa)    
Predicted Functional Partners:
focC_5
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
   0.638
focC_4
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
   0.638
smpA
Small protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.636
fimC_7
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
   0.625
hisB
hisB_Nterm: histidinol-phosphatase; In the N-terminal section; belongs to the histidinol- phosphatase family.
      
 0.618
fadR
Fatty acid metabolism transcriptional regulator FadR; Multifunctional regulator of fatty acid metabolism.
      
 0.618
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.574
CH53_2450
Fimbrial family protein.
       0.568
CH53_2453
papC N-terminal domain protein.
  
   0.563
CH53_2454
Fimbrial family protein.
       0.406
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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