STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2456Hypothetical protein; Transcriptional regulatory, C terminal family protein. (290 aa)    
Predicted Functional Partners:
CH53_2455
Hypothetical protein.
       0.773
CH53_4164
tape_meas_lam_C: phage tail tape measure protein, lambda family.
  
     0.587
hspQ
Hemimethylated DNA binding domain protein; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family.
  
     0.570
yfgJ
Hypothetical protein.
  
     0.495
CH53_1819
Bacterial regulatory s, luxR family protein.
  
    0.477
CH53_2023
yhhN-like family protein.
  
     0.461
CH53_247
Putative enterotoxin.
  
     0.437
CH53_3012
AAA domain family protein.
  
     0.424
ttrS
His Kinase A domain protein.
  
  
 0.406
mliC
Membrane-bound lysozyme-inhibitor of c-type lysozyme family protein.
  
     0.405
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.