STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2487Nuclear transport factor 2 domain protein. (144 aa)    
Predicted Functional Partners:
CH53_2490
Hypothetical protein.
 
   
 0.951
sdh
rmlD substrate binding domain protein.
 
     0.947
CH53_2489
FAD dependent oxidoreductase family protein.
 
   
 0.942
CH53_2492
Hypothetical protein.
 
     0.927
cdfA_2
Methyltransferase small domain protein.
 
     0.915
ycgE
merR regulatory family protein.
     
 0.817
outI
Type II secretion system (T2SS), I family protein.
  
     0.479
yhjH_2
EAL domain protein.
  
     0.425
CH53_2493
Prolyl oligopeptidase family protein.
       0.408
yciK
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.407
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.