STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2490Hypothetical protein. (241 aa)    
Predicted Functional Partners:
cdfA_2
Methyltransferase small domain protein.
  
 0.995
CH53_2489
FAD dependent oxidoreductase family protein.
 
  
 0.967
CH53_2492
Hypothetical protein.
 
  
 0.963
CH53_2487
Nuclear transport factor 2 domain protein.
 
   
 0.959
sdh
rmlD substrate binding domain protein.
 
     0.927
ycgE
merR regulatory family protein.
     
 0.842
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.804
phr
FAD binding domain of DNA photolyase family protein.
 
  
 0.536
blc
Lipocalin-like domain protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
 
     0.422
CH53_2493
Prolyl oligopeptidase family protein.
       0.408
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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