Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cdfA_2Methyltransferase small domain protein. (409 aa)    
Predicted Functional Partners:
CH53_2490
Hypothetical protein.
  
 0.995
CH53_2489
FAD dependent oxidoreductase family protein.
  
 0.984
CH53_2487
Nuclear transport factor 2 domain protein.
 
     0.917
sdh
rmlD substrate binding domain protein.
 
    0.897
CH53_2492
Hypothetical protein.
 
   
 0.892
ycgE
merR regulatory family protein.
     
 0.799
phr
FAD binding domain of DNA photolyase family protein.
 
   
 0.514
CH53_3844
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.424
pduO_1
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
   
    0.415
CH53_2493
Prolyl oligopeptidase family protein.
       0.408
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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