Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clpVVI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family. (890 aa)    
Predicted Functional Partners:
clpV-2
VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
  
  
 
0.908
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.882
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
 
 
 0.860
CH53_2548
Hypothetical protein.
 
  
 0.831
CH53_2549
Hypothetical protein.
 
  
 0.829
hcp1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.818
CH53_2555
vgr_GE: Rhs element Vgr family protein.
 
  
 0.818
CH53_2559
Lysozyme family protein; Gene 25-like.
 
  
 0.816
CH53_2554
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.814
CH53_2552
Hypothetical protein.
 
  
 0.813
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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