Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycgG_1EAL domain protein. (533 aa)    
Predicted Functional Partners:
yfiN
GGDEF: diguanylate cyclase domain protein.
  
 0.972
pleD_1
GGDEF: diguanylate cyclase domain protein.
 
 0.913
cph2_2
GGDEF: diguanylate cyclase domain protein.
 
 0.902
ydaM_1
Putative diguanylate cyclase YdaM.
    0.881
adrA_2
GGDEF: diguanylate cyclase domain protein.
 
 0.873
adrA_3
Putative diguanylate cyclase AdrA.
  
 0.870
hmsT_1
GGDEF: diguanylate cyclase domain protein.
    0.850
pleD_2
GGDEF: diguanylate cyclase domain protein.
    0.849
dosC
GGDEF: diguanylate cyclase domain protein.
 
  
 0.837
gmr_4
GGDEF: diguanylate cyclase domain protein.
 
    0.826
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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