STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yggR_1pilT_fam: twitching motility family protein. (379 aa)    
Predicted Functional Partners:
outO
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.898
hofC
Type II secretion system (T2SS), F family protein.
 
  
 0.849
hofF
Type II secretion system (T2SS), F family protein.
 
  
 0.849
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
 
   
 0.811
yggS
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis.
       0.654
CH53_152
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
     
 0.653
gspG
typeII_sec_gspG: type II secretion system protein G.
 
  
 0.602
CH53_1547
Fimbrial assembly family protein.
  
  
 0.576
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.529
adrA_2
GGDEF: diguanylate cyclase domain protein.
 
  
 0.466
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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