Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
appA_2Bacterial extracellular solute-binding s, 5 Middle family protein. (602 aa)    
Predicted Functional Partners:
yejB
Inner membrane ABC transporter permease protein yejB.
 
   
 0.953
yejE
Inner membrane ABC transporter permease protein yejE.
 
   
 0.953
nikE
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
 
  
 0.936
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
    0.738
dppB_2
Binding--dependent transport system inner membrane component family protein.
 
 
 0.535
dppC
Binding--dependent transport system inner membrane component family protein.
 
 
 0.523
ddpB
Binding--dependent transport system inner membrane component family protein.
  
 
 0.463
oppB
Oligopeptide transport system permease protein oppB.
  
 
 0.463
gsiC
Binding--dependent transport system inner membrane component family protein.
  
 
 0.463
dppB_1
Binding--dependent transport system inner membrane component family protein.
  
 
 0.463
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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