STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
endAEndonuclease I family protein. (235 aa)    
Predicted Functional Partners:
rsmE
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.679
sprT
Peptidase MA superfamily protein; Belongs to the SprT family.
     
 0.642
gshB
Glut_syn: glutathione synthase; Belongs to the prokaryotic GSH synthase family.
       0.626
CH53_2598
Sulfur transport family protein.
 
     0.461
CH53_2599
Sulfur transport family protein.
 
     0.453
cru_1
nupC: nucleoside transporter, NupC family protein; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.
      
 0.434
yciU
Hypothetical protein; Belongs to the UPF0263 family.
  
     0.433
cpdB
cycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family.
     
 0.405
ushA
Protein UshA; Belongs to the 5'-nucleotidase family.
     
 0.404
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.