STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttrCPolysulfide reductase, NrfD family protein. (362 aa)    
Predicted Functional Partners:
ttrA
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.997
ttrB_2
4Fe-4S dicluster domain protein.
 
 
 0.995
ttrS
His Kinase A domain protein.
 
   
 0.925
glpE
Thiosulfate sulfurtransferase glpE; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
    
  0.901
sseA
Rhodanese-like domain protein.
    
  0.901
fixJ_2
Bacterial regulatory s, luxR family protein.
 
   
 0.829
dmsC2
DMSO reductase anchor subunit family protein.
  
    0.574
CH53_922
Phage integrase family protein.
  
     0.547
CH53_3645
Phage terminase large subunit family protein.
  
     0.527
CH53_4164
tape_meas_lam_C: phage tail tape measure protein, lambda family.
  
     0.517
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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