Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yejBInner membrane ABC transporter permease protein yejB. (366 aa)    
Predicted Functional Partners:
yejE
Inner membrane ABC transporter permease protein yejE.
 
  
 0.982
nikE
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
 
  
 0.974
appA_2
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
   
 0.953
oppD_1
ABC transporter family protein.
 
   
 0.541
ddpC_2
Binding--dependent transport system inner membrane component family protein.
 
     0.538
ddpC_1
Binding--dependent transport system inner membrane component family protein.
 
     0.538
dppC
Binding--dependent transport system inner membrane component family protein.
 
     0.501
gsiA_2
ABC transporter family protein.
 
   
 0.488
dppD
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
   
 0.486
sapC
Peptide transport system permease protein sapC.
  
   
 0.462
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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