nikE protein (Yersinia intermedia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nikE

nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily. (533 aa)

Predicted Functional Partners:

yejB

0.974

yejE

0.973

appA_2

0.936

ddpC_1

0.880

ddpC_2

0.860

dppC

0.797

oppC

0.721

dppB_2

0.703

dppB_1

0.687

ddpC_3

0.679

Your Current Organism:

Yersinia intermedia

NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
appA_2	ddpC_1	CH53_259	CH53_880	Bacterial extracellular solute-binding s, 5 Middle family protein.	Binding--dependent transport system inner membrane component family protein.	0.459
appA_2	ddpC_2	CH53_259	CH53_1246	Bacterial extracellular solute-binding s, 5 Middle family protein.	Binding--dependent transport system inner membrane component family protein.	0.459
appA_2	ddpC_3	CH53_259	CH53_734	Bacterial extracellular solute-binding s, 5 Middle family protein.	Binding--dependent transport system inner membrane component family protein.	0.434
appA_2	dppB_1	CH53_259	CH53_881	Bacterial extracellular solute-binding s, 5 Middle family protein.	Binding--dependent transport system inner membrane component family protein.	0.463
appA_2	dppB_2	CH53_259	CH53_1644	Bacterial extracellular solute-binding s, 5 Middle family protein.	Binding--dependent transport system inner membrane component family protein.	0.535
appA_2	dppC	CH53_259	CH53_1643	Bacterial extracellular solute-binding s, 5 Middle family protein.	Binding--dependent transport system inner membrane component family protein.	0.523
appA_2	nikE	CH53_259	CH53_262	Bacterial extracellular solute-binding s, 5 Middle family protein.	nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.	0.936
appA_2	oppC	CH53_259	CH53_3877	Bacterial extracellular solute-binding s, 5 Middle family protein.	Oligopeptide transport system permease protein oppC.	0.459
appA_2	yejB	CH53_259	CH53_260	Bacterial extracellular solute-binding s, 5 Middle family protein.	Inner membrane ABC transporter permease protein yejB.	0.953
appA_2	yejE	CH53_259	CH53_261	Bacterial extracellular solute-binding s, 5 Middle family protein.	Inner membrane ABC transporter permease protein yejE.	0.953
ddpC_1	appA_2	CH53_880	CH53_259	Binding--dependent transport system inner membrane component family protein.	Bacterial extracellular solute-binding s, 5 Middle family protein.	0.459
ddpC_1	dppB_1	CH53_880	CH53_881	Binding--dependent transport system inner membrane component family protein.	Binding--dependent transport system inner membrane component family protein.	0.978
ddpC_1	dppB_2	CH53_880	CH53_1644	Binding--dependent transport system inner membrane component family protein.	Binding--dependent transport system inner membrane component family protein.	0.909
ddpC_1	nikE	CH53_880	CH53_262	Binding--dependent transport system inner membrane component family protein.	nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.	0.880
ddpC_1	yejB	CH53_880	CH53_260	Binding--dependent transport system inner membrane component family protein.	Inner membrane ABC transporter permease protein yejB.	0.538
ddpC_2	appA_2	CH53_1246	CH53_259	Binding--dependent transport system inner membrane component family protein.	Bacterial extracellular solute-binding s, 5 Middle family protein.	0.459
ddpC_2	dppB_1	CH53_1246	CH53_881	Binding--dependent transport system inner membrane component family protein.	Binding--dependent transport system inner membrane component family protein.	0.908
ddpC_2	dppB_2	CH53_1246	CH53_1644	Binding--dependent transport system inner membrane component family protein.	Binding--dependent transport system inner membrane component family protein.	0.909
ddpC_2	nikE	CH53_1246	CH53_262	Binding--dependent transport system inner membrane component family protein.	nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.	0.860
ddpC_2	yejB	CH53_1246	CH53_260	Binding--dependent transport system inner membrane component family protein.	Inner membrane ABC transporter permease protein yejB.	0.538

page 1 of 4

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About