STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspDtype_II_gspD: type II secretion system protein D. (658 aa)    
Predicted Functional Partners:
gspG
typeII_sec_gspG: type II secretion system protein G.
  
 0.978
hofF
Type II secretion system (T2SS), F family protein.
 
  
 0.954
epsE
General secretion pathway protein E.
 
  
 0.948
gspJ
gspJ: type II secretion system protein J.
 
  
 0.927
outC
Type IV pilus biogenesis family protein.
  
 
 0.924
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
  
 
 0.915
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
 
 0.913
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
  
 
 0.908
outL
gspL periplasmic domain protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.862
outO
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.813
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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