STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttrB_24Fe-4S dicluster domain protein. (244 aa)    
Predicted Functional Partners:
ttrA
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.997
ttrC
Polysulfide reductase, NrfD family protein.
 
 
 0.993
sseA
Rhodanese-like domain protein.
     
 0.905
glpE
Thiosulfate sulfurtransferase glpE; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
     
  0.900
hybB
Putative membrane protein.
 
 
 0.825
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit.
 
 
 0.800
ttrS
His Kinase A domain protein.
 
   
 0.756
dmsA2
dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.746
dmsA
Anaerobic dimethyl sulfoxide reductase chain A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.717
CH53_1681
Molybdopterin oxidoreductase Fe4S4 domain protein.
 
 
 0.638
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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