STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejMType I phosphodiesterase / nucleotide pyrophosphatase family protein. (597 aa)    
Predicted Functional Partners:
yejK
37-kD nucleoid-associated bacterial family protein.
 
   
 0.894
yejL
Hypothetical protein; Belongs to the UPF0352 family.
 
  
 0.891
lapB
Tetratricopeptide repeat family protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
  
 
 
 0.770
yfbV
Hypothetical protein.
  
     0.732
yciS
Inner membrane protein yciS; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
   
 0.676
yihD
Protein yihD.
  
     0.661
matP
Organizer of macrodomain of Terminus of chromosome family protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.652
yafD
endonuclease/Exonuclease/phosphatase family protein.
  
     0.629
frsA
Alpha/beta hydrolase family protein; Belongs to the UPF0255 family.
  
     0.609
ycdY
Nitrate reductase delta subunit.
  
     0.602
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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