STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2758Hypothetical protein. (113 aa)    
Predicted Functional Partners:
ycfL
Hypothetical protein.
  
     0.721
CH53_4334
Hypothetical protein.
  
     0.720
ybjP
Putative lipoprotein YbjP.
  
     0.696
CH53_263
yejG-like family protein.
  
     0.693
alaE
Hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.666
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase.
       0.654
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.637
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
     0.572
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.546
ytfJ
Hypothetical protein.
  
     0.540
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.