Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
ybbH_5SIS domain protein. (246 aa)    
Predicted Functional Partners:
murR_1
SIS domain protein.
  
     0.639
rpiR
HTH-type transcriptional regulator rpiR.
  
     0.637
bglF
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
  
 0.636
ybbH_1
SIS domain protein.
  
     0.587
yabJ_1
Endoribonuclease L-PSP family protein.
     
 0.577
CH53_2425
Isochorismatase family protein.
 
  
 0.533
arbF_2
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein.
 
  
 0.485
bglA
Glycosyl hydrolase 1 family protein; Belongs to the glycosyl hydrolase 1 family.
 
    0.484
CH53_278
Hypothetical protein.
       0.449
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
 
  
 0.446
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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