Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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ycgRFlagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. (249 aa)    
Predicted Functional Partners:
flgK
flgK_ends: flagellar hook-associated protein FlgK.
 
  
 0.857
motB
Motility protein B.
 
 
 0.819
fliS
fliS: flagellar protein FliS.
 
  
 0.811
flgN
flgN family protein.
 
  
 0.787
cheV
Response regulator.
 
  
 0.786
flgE
flgEFG_subfam: flagellar hook-basal body family protein.
 
  
 0.784
fliD
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
  
 0.773
flgD
Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.766
motA
motA1: flagellar motor stator protein MotA.
 
 
 0.750
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
 
  
 0.747
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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