STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgrR_2Bacterial extracellular solute-binding s, 5 Middle family protein. (567 aa)    
Predicted Functional Partners:
yobD
Hypothetical protein.
  
     0.753
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
     0.703
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
     0.695
CH53_2025
Hypothetical protein.
  
     0.690
CH53_143
Fructosamine kinase family protein.
  
     0.670
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.670
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.662
yiaH
Inner membrane protein YiaH; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.639
ycfL
Hypothetical protein.
  
     0.631
CH53_744
Hypothetical protein.
  
     0.628
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.